PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN47390.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 391aa    MW: 44802.6 Da    PI: 4.628
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN47390.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.38.1e-36141052102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d+++++++sws++++sf+v+++ ef++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+ +ll++i+
    KHN47390.1  14 FLTKIYEMVDDPSTNSIVSWSATNRSFIVWNPPEFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANDDFVRGQPHLLKNIH 101
                   9********************999****************************************9998.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    KHN47390.1 102 RRKP 105
                   *985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-39498IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.33E-369103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.1E-6310103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-3214103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MEEAQGSSSS LPPFLTKIYE MVDDPSTNSI VSWSATNRSF IVWNPPEFSR DLLPKYFKHN  60
NFSSFIRQLN TYGFRKIDPE QWEFANDDFV RGQPHLLKNI HRRKPVHSHS LQNIQGQGVS  120
SLTESERQSF KDEIEKLKHE KEQLLRELEM HEQEWKMYEV QLQHSNDRLE KLEKKQENLV  180
SSVSQVLQKP GIALNLLLLT ENMDRKRRLP RSGLFSDDAS IEDHMETSQV LPRENADGAS  240
IFSSSTERLD LLESSMTFWE NITHDVGDVF VQSHLNLDFD ESTSCADSPA ISCVQLEVED  300
QPKSHGINVS SEPAVVAAPD LDASKEQPVE TAPLTTGVND IFWERFLTEN PGSSEMQEAQ  360
SEREDSDGRS NAKFWWNIRN VNNPPEQMGH S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-26910324129Heat shock factor protein 1
5d5v_B5e-26910324129Heat shock factor protein 1
5d5v_D5e-26910324129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203208DRKRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003542993.10.0PREDICTED: heat stress transcription factor A-4a-like
SwissprotO494031e-124HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A0B2SR660.0A0A0B2SR66_GLYSO; Heat stress transcription factor A-4a
TrEMBLI1M1P70.0I1M1P7_SOYBN; Uncharacterized protein
STRINGGLYMA13G29760.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-126heat shock transcription factor A4A
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]